多免疫基因预后模型在评估结直肠癌生存和预后中的作用:基于TCGA数据库的研究

    Role of multi-immune gene prognosis model in evaluating the survival and prognosis of colorectal cancer: a study based on the TCGA database

    • 摘要:
      目的通过生物信息学方法筛选与结直肠癌预后相关的免疫基因并构建多免疫基因预后模型, 以期为结直肠癌生存和预后的评估提供重要的临床资料, 并为肿瘤免疫在结直肠癌中的研究提供思路。
      方法从TCGA数据库下载结直肠癌基因表达数据和临床病理数据, 对其进行差异分析后获得差异表达的基因; 从ImmPort免疫基因数据库下载免疫基因, 与结直肠癌差异基因取交集后获得差异表达的免疫基因; 进一步对差异免疫基因进行生存分析获得结直肠癌预后相关基因, 以此构建多免疫基因预后模型(预后模型); 然后, 通过生存分析预后模型风险评分对结直肠癌生存的影响, 利用ROC分析以及绘制风险曲线验证预后模型风险评分在评估结直肠癌预后中的准确性; 通过独立预后分析预后模型风险评分是否可作为评估病人预后的独立风险因子; 最后, 分析免疫基因与转录因子及免疫细胞的相关性。
      结果免疫基因预后模型风险评分高风险组预后较差(P < 0.01);预后模型风险评分能对结直肠病人预后进行准确分组, 并且在对结直肠预后的分析中具有较高的准确性(AUC=0.861);免疫基因与转录因子以及免疫细胞之间存在一定的相关性。
      结论预后模型能准确评估病人预后, 并且高风险组病人的生存期显著低于低风险组; 免疫基因可能通过调节转录因子以及免疫细胞的产生进而调节肿瘤的恶性进展, 该研究阐明了免疫因素对结直肠癌预后的影响, 为结直肠癌在免疫方向的研究提供了参考。

       

      Abstract:
      ObjectiveTo screen the immune genes related to the prognosis of colorectal cancer through bioinformatics and construct a multi-immune gene prognosis model, so as to provide important clinical data for the evaluation of survival and prognosis of colorectal cancer, and to provide ideas for the study of tumor immunity in colorectal cancer.
      MethodsThe gene expression data and clinicopathological data of colorectal cancer were downloaded from TCGA database, and the differentially expressed genes were obtained after differential analysis.The immune genes were downloaded from ImmPort immune gene database, and the differentially expressed immune genes were obtained after intersection with differential genes of colorectal cancer.Further, survival analysis of differential immune genes was carried out to obtain prognosis-related genes of colorectal cancer, so as to build a multi-immune gene prognosis model (prognosis model).Then, the effect of prognosis model risk score on the survival of colorectal cancer was evaluated by survival analysis, ROC analysis and drawing the risk curve were used to verify the accuracy of the prognosis model risk score in assessing the prognosis of colorectal cancer, and whether the prognostic model risk score being an independent risk factor for the prognosis of patients was evaluated through independent prognostic analysis.Finally, the correlation between immune genes, transcription factors and immune cells was analyzed.
      ResultsThe prognosis of the high-risk group with immune gene prognosis model risk score was poor (P < 0.01).The prognostic model risk score could accurately group the prognosis of colorectal patients, and had high accuracy in the analysis of colorectal prognosis (AUC=0.861).There is a certain correlation between immune genes, transcription factors and immune cells.
      ConclusionsThe prognosis model can accurately assess the prognosis of patients, and the survival time of patients in the high-risk group is significantly lower than that of the low-risk group.Immune genes may regulate the malignant progression of tumors by regulating the production of transcription factors and immune cells.This study clarifies the influence of immune factors on the prognosis of colorectal cancer, and provides the reference for the research of colorectal cancer in the field of immunity.

       

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