口腔扁平苔藓免疫相关差异基因的筛选及分析

    Identification and analysis of immune-related differentially expressed genes in oral lichen planus

    • 摘要:
      目的: 通过生物信息学方法筛选并分析免疫相关差异表达基因(differentially expressed genes,DEGs),探讨其在口腔扁平苔藓(oral lichen planus,OLP)上皮组织中的表达与意义。
      方法: 从基因表达谱数据库和GeneCards筛选免疫相关DEGs。通过STRING数据库和Cytoscape软件构建免疫相关DEGs蛋白互作网络(protein – protein interactions,PPI),使用cytohubba插件筛选hub基因。通过spearman检验进行相关性分析。使用基因本体论(gene oncology,GO)和基因百科全书(kyoto encyclopedia of genes and genomes,KEGG)分析分别对免疫相关DEGs和核心基因进行功能富集分析。最后通过NetworkAnalyst预测核心基因miRNA和TF。
      结果: 研究分析得到337个免疫相关DEGs,并筛选到10个核心基因在OLP中均显著性高表达(P < 0.05)。GO分析显示核心基因主要在细胞外基质(extracellular matrix,ECM)和Rho等相关信号通路显著富集(P < 0.05),KEGG分析表明其在黏附、ECM和PI3K – Akt信号通路显著富集(P < 0.05)。同时预测到140个miRNAs、65个TFs。
      结论: 通过生物信息学分析筛选到COL6A3、LUM、COL4A1、COL1A2、COL3A1、COL5A2、LOX、THBS2、PDGFRB和CDH11 10个免疫相关DEGs,有助于进一步分析OLP发病机制,可能为OLP治疗提供新的方向和策略。

       

      Abstract:
      Objective To screen and analyze immune-related differentially expressed genes (DEGs) through bioinformatics methods, and explore their expression and significance in the epithelial tissues of oral lichen planus (OLP).
      Methods The immune-related DEGs were screened from the gene expression profile database and GeneCards. The immune-related DEGs protein-protein interactions (PPI) network was constructed through the STRING database and Cytoscape software, and the hub genes were screened using the cytohubba plugin. The correlation analysis was conducted through spearman test. The functional enrichment analyses of immune-related DEGs and core genes were performed using gene oncology (GO) and kyoto encyclopedia of genes and genomes (KEGG) analyses. Finally, the core genes miRNA and TF were predicted through NetworkAnalyst.
      Results A total of 337 immune-related DEGs were obtained through research and analysis, and 10 core genes were screened, all of which were significantly highly expressed in OLP (P < 0.05). The results of GO analysis showed that the core genes were mainly significantly enriched in the extracellular matrix (ECM) and related signaling pathways such as Rho (P < 0.05), while the KEGG analysis indicated that they were significantly enriched in the adhesion, ECM and PI3K-Akt signaling pathways (P < 0.05). Simultaneously, 140 miRNAs and 65 TFs were predicted.
      Conclusions Through bioinformatics analysis, 10 immune-related DEGs, namely COL6A3, LUM, COL4A1, COL1A2, COL3A1, COL5A2, LOX, THBS2, PDGFRB and CDH11, are screened out, which is helpful for further analysis of the pathogenesis of OLP, and may provide some new directions and strategies for OLP treatment.

       

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