构建乳酸代谢相关基因模型预测子宫内膜癌预后及免疫治疗反应

    Construction of a lactate metabolism-related gene model to predict prognosis and immunotherapy response in endometrial cancer

    • 摘要:
      目的: 探究乳酸相关基因对子宫内膜癌预后的影响,构建预后评估模型并验证其与免疫微环境及临床应用的相关性。
      方法: 基于公共数据库(TCGA-UCEC),通过生物信息学筛选乳酸相关基因,建立预后风险模型(LMRGS);利用ROC曲线评估模型预测效能,GSE2882数据集进行外部验证;采用ssGSEA分析模型分组间免疫功能和检查点分子表达差异;通过临床样本实验验证关键基因表达。
      结果: 筛选出10个关键基因(ACADM、CYP27A1、CARS2、TIMM50、KY、SLC16A7、HPDL、LARGE1和CLPB),共识别出6个高风险基因(HPDL、ACADM、CARS2、TIMM50、KY和SLC16A7)(HR > 1)。高风险组(HPDL、TIMM50、CARS2等)在晚期(Ⅲ/Ⅳ期)均为高表达(P < 0.05~P < 0.01),且病人总生存期与中位生存期均短于低风险组(P < 0.01)。TCGA队列1/3/5年AUC分别为0.716、0.749、0.742;外部验证(GSE2882)1/3年AUC为0.79、0.810。低风险组中高表达的免疫功能有Type_II_IFN_Reponse、T_cell_co−stimulation 、T cell co−stimulation、CCR、HLA和 Check−point(P < 0.05)。高风险组高表达的免疫细胞有CCL28、Low MICB、VEGFA、EZH2、SMC3、TIMD4和LAG3(P < 0.05~P < 0.01)。TIMM50在癌组织高表达,KY、SLC16A7低表达(P < 0.01),与生信结果一致。
      结论: 乳酸相关基因预后模型可有效评估子宫内膜癌病人预后及免疫治疗响应,高风险组与免疫抑制微环境相关,为个体化治疗提供潜在靶点。

       

      Abstract:
      Objective To investigate the effect of lactate-related genes on the prognosis of endometrial cancer, construct a prognostic assessment model and validate its relevance to the immune microenvironment and clinical application.
      Methods Based on a public database (TCGA-UCEC), a prognostic risk model (LMRGS) was constructed by bioinformatics screening of lactate-related genes; the predictive efficacy of the model was assessed using ROC curves, and external validation was performed on the GSE2882 dataset; differences in the immune function and checkpoint molecular expression between model subgroups were analyzed using ssGSEA; and key gene expression.
      Results Ten key genes (ACADM, CYP27A1, CARS2, TIMM50, KY, SLC16A7, HPDL, LARGE1, and CLPB) were screened, and a total of 6 high-risk genes (HPDL, ACADM, CARS2, TIMM50, KY, and SLC16A7) were identified (HR > 1). The high-risk groups (HPDL, TIMM50, CARS2, etc.) were all highly expressed in the late stage (stage Ⅲ/Ⅳ) (P < 0.01 to P < 0.05), and the patients' overall and median survival were shorter than that of the low-risk group (P < 0.01).The 1/3/5-year AUC of the TCGA cohort was 0.716, 0.749, and 0.742, respectively; the 1/3-year AUC of external validation (GSE2882) was 0.79 and 0.810. Highly expressed immune functions in the low-risk group were Type II IFN Reponse, T cell co-stimulation, CCR, HLA and Check -point (P < 0.05). The highly expressed immune cells in the high-risk group were CCL28, Low MICB, VEGFA, EZH2, SMC3, TIMD4 and LAG3 (P < 0.05 to P < 0.01). Experimental verification: TIMM50 was highly expressed in cancer tissues, and KY and SLC16A7 were lowly expressed (P < 0.01), which was consistent with the bioinformatics results.
      Conclusions Lactate-related gene prognostic model can effectively assess the prognosis and immunotherapy response of endometrial cancer patients, and the high-risk group is associated with immunosuppressive microenvironment, which provides a potential target for individualized treatment.

       

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