基于转录组测序筛选血管衰老与动脉粥样硬化共同差异基因及验证

    Screening and validation of common differentially expressed genes in vascular aging and atherosclerosis based on transcriptome sequencing

    • 摘要:
      目的 本研究旨在通过转录组测序和生物信息学分析,挖掘与血管衰老及动脉粥样硬化(atherosclerosis, AS)进展密切相关的关键基因并进行验证。
      方法 设立4组小鼠模型,包括青年组( 8周龄C57BL/6J野生型小鼠)、自然衰老组( 22月龄C57BL/6J野生型小鼠)、早期AS组( 8周龄ApoE–/–小鼠构建的早期AS模型)、晚期AS组(8周龄ApoE–/–小鼠构建的晚期AS模型)。取其主动脉组织进行转录组测序分析,筛选血管衰老相关差异表达基因(differential expressed genes, DEGs)和AS进展相关DEGs,并应用逆转录聚合酶链反应(RT–qPCR)进行验证。
      结果 以青年组为对照组,自然衰老组为实验组,共筛选出2251个血管衰老相关DEGs;以早期AS组为对照组,晚期AS组为实验组,共筛选出627个AS进展相关DEGs。维恩图分析上述2组DEGs,筛选出109个血管衰老与AS进展共同核心DEGs。富集分析显示共同核心DEGs显著富集于TNF、NF–κB等信号通路。蛋白质–蛋白质相互作用(PPI)网络分析筛选出Tyrobp、Ctss、Fcgr3、C1qa、C1qc、Fcer1g共6个Hub基因。RT–qPCR验证显示6个Hub基因在自然衰老组和晚期AS组中的mRNA表达水平均上调(P < 0.01),与转录组测序结果一致。
      结论 Tyrobp等6个关键基因与血管衰老及AS进展密切相关,可作为潜在的血管衰老和AS进展生物标志物。

       

      Abstract:
      Objective To identify and verify the key genes closely related to the vascular aging and progression of atherosclerosis(AS) through transcriptome sequencing and bioinformatics analysis.
      Methods Four groups of mouse models were established, including the youth group(8-week-old C57BL/6J wild-type mice), natural aging group(22-month-old C57BL/6J wild-type mice), early AS group(early AS model constructed by 8-week-old ApoE-/- mice) and late AS group(late AS model constructed by 8-week-old ApoE-/- mice). The aortic tissues were taken for transcriptome sequencing analysis to screen the differential expressed genes(DEGs) related to vascular aging and AS progression, and the results were verified by reverse transcription polymerase chain reaction(RT-qPCR).
      Results Taking the youth group as the control group, and the natural aging group as the experimental group, a total of 2,251 vascular aging-related DEGs were screened out. Taking the early AS group as the control group, and the advanced AS group as the experimental group, a total of 627 DEGs related to the progression of AS were screened out. Venn diagram analysis was conducted on the above two groups of DEGs, and 109 common core DEGs related to vascular aging and AS progression were screened out. Enrichment analysis revealed that the common core DEGs were significantly enriched in signaling pathways such as TNF and NF-κB. Protein-protein interaction(PPI) network analysis screened out a total of six Hub genes, namely Tyrobp, Ctss, Fcgr3, C1qa, C1qc and Fcer1g. RT-qPCR verification showed that the mRNA expression levels of the six Hub genes were upregulated in the natural aging group and advanced AS group(P < 0.01), which was consistent with the results of transcriptome sequencing.
      Conclusions Six key genes, including Tyrobp, are closely related to the vascular aging and progression of AS, and can serve as the potential biomarkers for vascular aging and progression of AS.

       

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