鲍曼不动杆菌OmpA基因的原核表达及蛋白的生信分析

    Prokaryotic expression and biogenic analysis of OmpA gene in Acinetobacter baumannii

    • 摘要:
      目的: 克隆、表达、纯化鲍曼不动杆菌(Acinetobacter baumannii,Ab)OmpA蛋白,为进一步制备Ab_OmpA多克隆抗体以及探究Ab_OmpA在Ab中的表达情况及其具体生物学活性提供基础。
      方法: 从NCBI官网下载AB5075菌株OmpA基因序列设计并合成一对含BamH I和Xho I酶切位点的特异性引物,利用PCR方法扩增OmpA基因,采用基因工程的方法构建原核表达重组质粒Ab_OmpA-pET28a,酶切及测序验证连接成功。将成功的重组质粒Ab_OmpA-pET28a转化到大肠埃希菌(Escherichia coliE. coli) BL21(DE3)菌株,以IPTG诱导OmpA蛋白表达,然后利用His标签蛋白纯化琼脂糖磁珠纯化OmpA蛋白,SDS-PAGE检测OmpA蛋白的纯化效果,探索最适的诱导条件,保存蛋白。利用ExPASy-Translate Tool、CDD、TMHMM-2.0、IEDB Analysis Resource、ProtParam、ProtScale、SignalP-4.1、PSORTⅡ、SOPMA、SWISS-MODEL等多个在线软件对OmpA进行生物信息分析。
      结果: 获得了预期1 500 bp的OmpA基因,并成功克隆至 pET-28a质粒,经IPTG诱导表达,成功纯化出OmpA蛋白。OmpA蛋白的生信分析显示,Ab AB5075_OmpA基因编码471个氨基酸,蛋白质分子式为C2156H3510N594O693S4,理论蛋白分子量大小为48 900,蛋白等电点为5.59,不稳定指数为33.33,脂肪族指数为100.81,亲水性平均值为–0.009,为亲水稳定蛋白。有两个跨膜区但无信号肽,序列高度保守。二级结构主要有无规则卷曲和α螺旋。OmpA蛋白亚细胞定位于细胞核,有12个潜在的B细胞抗原表位,可与多个蛋白相互作用。
      结论: 成功获得Ab OmpA基因的原核表达产物,确定最适诱导条件为0.5 mmol/L IPTG 16 ℃下诱导24小时。制备Ab_OmpA多克隆抗体提供基础、院内感染Ab检测手段提供新思路以及进一步深入研究Ab OmpA致病机制奠定了基础。OmpA蛋白具有潜在的免疫原性,可作为OmpA疫苗和药物靶点研究的候选分子。

       

      Abstract:
      Objective To clone, express and purify OmpA protein of Acinetobacter baumannii, so as to provide a theoretical basis for further preparation of Ab_OmpA polyclonal antibody and explore the expression of Ab_OmpA in Acinetobacter baumannii and its specific biological activity.
      Methods The OmpA gene sequence of AB5075 strain was downloaded from NCBI official website and a pair of specific primers containing the enzyme restriction sites of BamH I and Xho I were synthesized. The OmpA gene was amplified by PCR and the prokaryotic expression recombinant plasmid Ab_OmpA-pET28a was constructed by genetic engineering. Enzyme digestion and sequencing verified the successful connection. The recombinant plasmid Ab_OmpA-pET28a was transformed into E. coli BL21 (DE3) strain, and the expression of OmpA protein was induced by IPTG, and then the OmpA protein was purified by agarice magnetic beads using His label protein. SDS-PAGE adhesive was used to detect the purification effect of OmpA protein, and explore the optimal induction conditions and preserve the protein. ExPASy-Translate Tool, CDD, TMHMM-2.0, IEDB, Resource, ProtParam, ProtScale, SignalP-4.1, PSORT Ⅱ, SOPMA, SWISS-MODEL were used for OmpA biological information analysis.
      Results The expected OmpA gene of about 1 500 bp was obtained and successfully cloned into pET-28a plasmid, and the OmpA protein was successfully purified through IPTG induced expression. Bioanalysis of OmpA protein showed that: Acinetobacter Baumannii AB5075_OmpA gene encoding 471 amino acids, protein molecular formula is C2156H3510N594O693S4, theoretical protein molecular weight is 48 900, protein isoelectric point is 5.59, instability index is 33.33. The aliphatic index was 100.81 and the mean hydrophilic value was –0.009, making it a hydrophilic stable protein. There were two transmembrane regions but no signaling peptides, and the sequence highly conserved. The secondary structure is mainly Random coil and α helix. The OmpA protein is subcellular to the nucleus and has 12 potential B-cell epitopes. It can interact with multiple proteins.
      Conclusions The prokaryotic expression product of OmpA gene in Acinetobacter baumannii was successfully obtained, and the optimal induction condition was determined to be 0.5mmol/L IPTG at 16 ℃ for 24 hours. The preparation of Ab_OmpA polyclonal antibody provides a basis for the detection of nosocomial Acinetobacter baumannii, and the further study of OmpA pathogenic mechanism lays a foundation. OmpA protein has potential immunogenicity and can be used as candidate molecules for OmpA vaccine and drug target research.

       

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